Gut Microbiome · 8 cited studies

Research on the Gut Microbiome

The gut microbiome went from speculative to mainstream in a decade. Sender 2016 (PLOS Biology) revised the bacteria-to-human-cell ratio downward to roughly 1:1 (vs the long-cited 10:1). Ridaura 2013 (Science) showed that mice colonised with the obese twin's microbiota became fatter than mice colonised with the lean twin's — diet-dependent. Rothschild 2018 (Nature) demonstrated that environment, primarily diet, dominates over host genetics in shaping microbial composition. David 2014 (Nature) found dietary shifts alter the microbiome within 24–48 hours. Cani's endotoxemia work links high-fat diets to systemic LPS and inflammation. The Sonnenburg lab's fibre-extinction studies show low-fibre diets cause microbial extinctions that compound across generations. Below: the foundational microbiome literature.

  • Strong evidence2016

    Revised estimates for the number of human and bacteria cells in the body

    Sender R, Fuchs S, Milo R · PLOS Biology

    Revised estimate: bacteria-to-human-cell ratio is roughly 1:1, not 10:1 as long claimed.

    Gut MicrobiomeSource ↗
  • Moderate evidence2013

    Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

    Ridaura VK et al. · Science

    Mice colonised with obese twin's microbiota became fatter than mice with lean twin's — diet-dependent.

    Gut MicrobiomeSource ↗
  • Strong evidence2018

    Environment dominates over host genetics in shaping human gut microbiota

    Rothschild D et al. · Nature

    In 1,046 Israelis, environment (especially diet) explained gut microbiota composition far more than host genetics.

    Gut MicrobiomeSource ↗
  • Strong evidence2014

    Diet rapidly and reproducibly alters the human gut microbiome

    David LA et al. · Nature

    Animal-based vs plant-based diet shifted gut microbiota composition within 24–48 hours.

    Gut MicrobiomeSource ↗
  • Moderate evidence2006

    An obesity-associated gut microbiome with increased capacity for energy harvest

    Turnbaugh PJ et al. · Nature

    Obese mouse microbiota harvested ~2% more calories from identical food than lean controls.

    Gut MicrobiomeSource ↗
  • Moderate evidence2016

    Diet-induced extinctions in the gut microbiota compound over generations

    Sonnenburg ED et al. · Nature

    Low-fibre diet induced microbial extinctions in mice that compounded across generations and were partly irreversible.

    Gut MicrobiomeSource ↗
  • Moderate evidence2007

    Metabolic endotoxemia initiates obesity and insulin resistance

    Cani PD et al. · Diabetes

    High-fat diet raised circulating LPS (endotoxemia), which drove insulin resistance and inflammation in mice.

    Gut MicrobiomeInsulin ResistanceSource ↗
  • Moderate evidence2018

    Role of the gut microbiota in nutrition and health

    Valdes AM et al. · BMJ

    BMJ overview: dietary diversity and fibre support a more diverse gut microbiota and better cardiometabolic health.

    Gut MicrobiomeSource ↗

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